The Handbook of Plant Metabolomics (eBook)

Wolfram Weckwerth, Guenter Kahl (Herausgeber)

eBook Download: EPUB

2013
Wiley-VCH (Verlag)
978-3-527-66990-5 (ISBN)

Infos

This is the newest title in the successful Molecular Plant Biology Handbook Series. Just like the other titles in the series this new book presents an excellent overview of different approaches and techniques in Metabolomics. Contributors are either from ivy-league research institutions or from companies developing new technologies in this dynamic and fast-growing field. With its approach to introduce current techniques in plant metabolomics to a wider audience and with many labs and companies considering to introduce metabolomics for their research, the title meets a growing market. The Kahl books are in addition a trusted brand for the plant science community and have always sold above expectations.

Gunter Kahl is Professor for Plant Molecular Biology at the Biocenter of Johann Wolfgang Goethe-University of Frankfurt am Main, Germany. After gaining his Ph.D. in plant biochemistry, he spent two postdoctoral years at Michigan State University, East Lansing (USA), joining Professor Joe Varner and Professor James Bonner at the California Institute of Technology, Pasadena, California. His main research interests focus on
- Gene Technology, in particular the genetic and physical mapping as well as isolation and characterization of plant defence genes and their promoters, and the use of in vitro modified defence genes for the improvement of plant crops via gene transfer.
- Genome Analysis, in particular the development of molecular marker , technologies and informative DNA markers for genomic fingerprinting, the establishment of genetic and physical maps, and the map-based cloning of agronomically important genes.
- Gene Expression Profiling of plant and animal tissues with expression microarrays and the patented high-throughput SuperSAGE technology. Development of expression markers and determination of expression phenotypes.
Due to the international nature of his work, Professor Kahl cooperates with a series of research institutions throughout Europe, Japan, the USA, Syria, India, Central and South America. Additionally, he is organizing a series of molecular marker courses in Austria, South America, Asia, Africa and the Middle East. He has served in expert missions for IAEA, FAO and UNESCO around the world.
Professor Kahl is the author of more than 250 scientific journal publications and several book publications including all titles of the successful book series `Molecular Plant Biology Handbook series?, and currently holds the CSO position at GenXPro GmbH, a company specializing in novel technologies in genomics and transcriptomics, located at the Frankfurt Innovation Centre for Biotechnology (FIZ), Frankfurt am Main, Germany.
Univ.-Prof. Dr. Wolfram Weckwerth
Professur fur Molekulare Pflanzenphysiologie, Department fur Okophysiologie und Funktionelle Anatomie der Pflanzen, Universitat Wien
Forschungsschwerpunkte:
- Entwicklung und Anwendung von genomweiten Metabolomics und Proteomics/Phosphoproteomics-Technologien in der Systembiologie; Hochdurchsatzprofilanalysen (HTP); Datenintegration; Kombination von HTP, multivariater Statistik, Mustererkennung in molekularen Daten und Stoffwechselmodellierung: 'Synergetics'
- Entwicklung theoretischer Modelle, aus HTP-Daten biochemische Regulation abzuleiten *Pflanzen-Genotyp-Phenotyp-Interaktion, unter anderem Verwendung von Pflanzenmutanten zur funktionalen Untersuchung von phenotypischer Plastizitat, Stress-, Wachstum-, Entwicklungs- und Stoffwechselphysiologie
- Genom-Annotation und Rekonstruktion von Stoffwechsel und Regulation in sequenzierten Modellorganismen, wie Arabidopsis thaliana (dicot), Oryza sativa (monocot), Chlamydomonas reinhardtii (einzellige Grunalge), Medicago truncatula (Leguminose) und andere, mithilfe von Metabolomics und Proteomics-Daten, Anwendung von Metabolomics und Proteomics auf nicht-sequenzierte Organismen wie Tomate, Kartoffel, Pflanzengemeinschaften, Biodiversitat etc.
- HTP-Datenbanken, Datenmanagement und Data-Mining

Autor

Günter Kahl is Professor for Plant Molecular Biology at the Biocenter of Johann Wolfgang Goethe-University of Frankfurt/Main, Germany. After gaining his PhD in plant biochemistry, he spent two postdoctoral years at Michigan State University, East Lansing, USA, joining Professor Joe Varner, and at the California Institute of Technology, Pasadena, California, with Professor James Bonner. His main research interests are: - Sequencing and analysis of fungal, plant and animal genomes - Transcriptome analysis in pro- and eukaryotic organisms - Technology development Günter Kahl is the author of more than 250 scientific journal publications and several book publications including all titles of the successful Molecular Plant Biology Handbook series, and currently holds the CSO position at GenXPro GmbH, a company specializing in novel technologies in genomics and transcriptomics, located at the Frankfurt Innovation Centre for Biotechnology (FIZ), Frankfurt/Main, Germany. Wolfram Weckwerth is Professor and founding chair of the Department of Molecular Systems Biology (MOSYS) at the University of Vienna, Austria. He holds a diploma in chemistry and a PhD in biochemistry, both from the Technical University Berlin, Germany. His main research interests are: - The development of genome-wide metabolomics and proteomics/phosphoproteomics technologies as elementary systems biology techniques, high throughput profiling (HTP) in systems biology, data integration; combining experimental approaches with multivariate statistics, pattern recognition, modeling of metabolism, and functional genome interpretation: synergetics - The genotype-environment-phenotype-equation: plant ecology and phenotypic plasticity including stress, growth, developmental and nutritional physiology - Plant-microbe-interaction and medicinal plants - Green Systems Biology: application of systems biology approaches in ecology, evolution and biotechnology

Inhalt

Preface
CENTRAL METABOLISM
Metabolic profiling of plants by GC-MS (Camilla B. Hill, Ute Roessner)
Isotopologue profiling: towards a better understanding of metabolic pathways (Wolfgang Eisenreich, Claudia Huber, Erika Kutzner, Nihat Knispel, Nicholas Schramek)
Nuclear magnetic resonance spectroscopy for plant metabolite profiling (Sonia van der Sar, Hye Kyong Kim, Axel Meissner, Robert Verpoorte, Young Hae Choi)
Comprehensive two-dimensional gas chromatography for metabolomics (Katja Dettmer, Martin F. Almstetter, Christian J. Wachsmuth and Peter J. Oefner)
MALDI mass spectrometric imaging of plants (Ales Svatos, Hans-Peter Mock)
Medicago truncatula root and shoot Metabolomics: Protocol for the investigation of the primary carbon and nitrogen metabolism based on GC-MS (Vlora Mehmeti, Lena Fragner, Stefanie Wienkoop)

SECONDARY AND LIPID METABOLISM
Study of the volatile metabolome in plant-insect interactions (Georg J.F. Weingart, Nora C. Lawo, Astrid Forneck, Rudolf Krska, Rainer Schuhmacher)
Metabolomics in Herbal Medicine Research (Lie-Fen Shyur, Chiu-Ping Liu, Shih-Chang Chien)
Integrative analysis of secondary metabolism and transcript regulation in Arabidopsis Thaliana (Fumio Matsuda, Kazuki Saito)
Liquid chromatography mass spectrometry analysis of flavonoids (Maciej Stobiecki, Piotr Kachlicki)
GC/MS based lipidomics (Takeshi Furuhashi, Wolfram Weckwerth)
Multi-gene transformation for pathway engineering of secondary metabolites (Hideyuki Suzuki, Eiji Takita, Kiyoshi Ohyama, Satoru Sawai, Hikaru Seki, Nozomu Sakurai, Toshiya Muranaka, Masao Ishimoto, Hiroshi Sudo, Kazuki Saito, Daisuke Shibata)

METABOLOMICS AND GENOMICS
Metabolomics Assisted Plant Breeding (Alexander Herrmann, Nicolas Schauer)
Conducting Genome Wide Association Mapping of Metabolites (Susanna Atwell, Daniel J. Kliebenstein)

METABOLOMICS AND BIOINFORMATICS
Metabolite clustering and visualization of mass spectrometry data using one-dimensional self-organizing maps (Alexander Kaever, Manuel Landesfeind, Kirstin Feussner, Ivo Feussner, Peter Meinicke)
Metabolite identification and computational mass spectrometry (Steffen Neumann, Florian Rasche, Sebastian Wolf, Sebastian Böcker)
COVAIN - a metabolomics data mining toolbox (Xiaoliang Sun, Wolfram Weckwerth)
Mass Spectral Search and Analysis using the Golm Metabolome Database (Jan Hummel, Nadine Strehmel, Christian Bölling, Stefanie Schmidt, Dirk Walther, Joachim Kopka)

Glossary
Index

Textauszug

List of Contributors

Martin F. Almstetter

University of Regensburg

Institute of Functional Genomics

Josef-Engert-Strasse 9

93053 Regensburg

Germany

Susanna Atwell

University of California, Davis

Department of Plant Sciences

One Shields Avenue

Davis, CA 95616

USA

Sebastian Böcker

Friedrich-Schiller-University Jena

Institute for Informatics

Ernst-Abbe-Platz 2

07743 Jena

Germany

Christian Bölling

Charité Universitätsmedizin Berlin

Computational Systems Biochemistry Group

Seestrasse 73

13347 Berlin

Germany

Shih-Chang Chien

National Chung Hsing University

Experimental Forest Management Office

No. 250, Kuo Kuang Road Taichung 402

Taiwan

Young Hae Choi

Leiden University

Institute of Biology

Natural Products Laboratory

Sylviusweg 72, 2333 BE Leiden

The Netherlands

Katja Dettmer

University of Regensburg

Institute of Functional Genomics

Josef-Engert-Strasse 9

93053 Regensburg

Germany

Wolfgang Eisenreich

Technische Universität München

Lehrstuhl für Biochemie

Lichtenbergstrasse 4

85435 Garching

Germany

Ivo Feussner

Georg-August-Universität Göttingen

Albrecht-von-Haller-Institute for Plant Sciences

Department of Plant Biochemistry

Justus-von-Liebig-Weg 11

37077 Göttingen

Germany

Kirstin Feussner

Georg-August-Universität Göttingen

Institute of Microbiology and Genetics

Department of Molecular Microbiology and Genetics

Grisebachstrasse 8

37077 Göttingen

Germany

and

Georg-August-Universität Göttingen

Albrecht-von-Haller-Institute for Plant Sciences

Department of Plant Biochemistry

Justus-von-Liebig-Weg 11

37077 Göttingen

Germany

Astrid Forneck

University of Natural Resources and Life Sciences, Vienna

Department of Crop Sciences

Division of Viticulture and Pomology

Konrad-Lorenz-Strasse 24

3430 Tulln

Austria

Lena Fragner

University of Vienna

Department of Molecular Systems Biology

Althanstrasse 14

1090 Vienna

Austria

Takeshi Furuhashi

University of Vienna

Department of Molecular Systems Biology (MOSYS)

Althanstrasse 14

1090 Vienna

Austria

Alexander Herrmann

Metabolomic Discoveries GmbH

Am Mühlenberg 11

14476 Potsdam-Golm

Germany

Camilla B. Hill

The University of Melbourne

School of Botany, Building 122

Australian Centre for Plant Functional Genomics (ACPFG)

Professors Walk

Parkville, VIC 3052

Australia

Claudia Huber

Technische Universität München

Lehrstuhl für Biochemie

Lichtenbergstrasse 4

85435 Garching

Germany

Jan Hummel

Max Planck Institute of Molecular Plant Physiology (MPIMP)

Bioinformatics Group

Am Muehlenberg 1

14476 Potsdam-Golm

Germany

Masao Ishimoto

National Institute of Agrobiological Sciences

2-1-2 Kannondai

Tsukuba

Ibaraki 305-8602

Japan

Piotr Kachlicki

Institute of Plant Genetics PAS

Strzeszyska 34

60-479 Pozna

Poland

Alexander Kaever

Georg-August-Universität Göttingen

Institute of Microbiology and Genetics

Department of Bioinformatics

Goldschmidtstrasse 1

37077 Göttingen

Germany

Hye Kyong Kim

Leiden University

Institute of Biology

Natural Products Laboratory

Sylviusweg 72, 2333 BE Leiden

The Netherlands

Daniel J. Kliebenstein

University of California, Davis

Department of Plant Sciences

One Shields Avenue

Davis, CA 95616

USA

Nihat Knispel

Technische Universität München

Lehrstuhl für Biochemie

Lichtenbergstrasse 4

85435 Garching

Germany

Joachim Kopka

Max Planck Institute of Molecular Plant Physiology

Applied Metabolome Analysis

Department 1

Prof. Lothar Willmitzer

Am Muehlenberg 1

D-14476 Potsdam-Golm

Germany

Rudolf Krska

University of Natural Resources and Life Sciences, Vienna

Center for Analytical Chemistry

Department IFA-Tulln

Konrad-Lorenz-Strasse 20

3430 Tulln

Austria

Erika Kutzner

Technische Universität München

Lehrstuhl für Biochemie

Lichtenbergstrasse 4

85435 Garching

Germany

Manuel Landesfeind

Georg-August-Universität Göttingen

Institute of Microbiology and Genetics

Department of Bioinformatics

Goldschmidtstrasse 1

37077 Göttingen

Germany

Nora C. Lawo

University of Natural Resources and Life Sciences, Vienna

Division of Viticulture and Pomology

Department of Crop Sciences

Konrad-Lorenz-Strasse 24

3430 Tulln

Austria

and

Syngenta Crop Protection Research Stein

Schaffhauserstrasse 101

4332 Stein

Switzerland

Chiu-Ping Liu

National Taiwan University

Institute of Biotechnology

No. 1, Sec. 4, Roosevelt Road

Taipei 10617

Taiwan

Fumio Matsuda

RIKEN Plant Science Center

Metabolomic Function Research Group

Suehiro-cho 1-7-22

Tsurumi-ku

Yokohama 230-0045

Japan

and

Osaka University

Graduate School of Information Science and Technology

Department of Bioinformatic Engineering

1-5, Yamada-oka Suita

Osaka 565-0871

Japan

Vlora Mehmeti

University of Vienna

Department of Molecular Systems Biology

Althanstrasse 14

1090 Vienna

Austria

Peter Meinicke

Georg-August-Universität Göttingen

Institute of Microbiology and Genetics

Department of Bioinformatics

Goldschmidtstrasse 1

37077 Göttingen

Germany

Axel Meissner

Leiden University Medical Center

Department of Parasitology

P.O. Box 9600

Eindhovenweg 20, 2333 ZC Leiden

The Netherlands

Hans-Peter Mock

Leibniz Institute of Plant Genetics and Crop Plant Research (IPK)

Corrensstrasse 3

06466 Gatersleben

Germany

Toshiya Muranaka

Yokohama City University

Kihara Institute for Biological Research

641-12 Maioka-cho

Totsuka-ku

Yokohama

Kanagawa 244-0813

Japan

and

Osaka University

Department of Biotechnology

2-1 Yamadaoka

Suita-shi

Osaka 565-0871

Japan

Steffen Neumann

Leibniz Institute of Plant Biochemistry, IPB Halle

Department of Stress and Developmental Biology

Weinberg 3

06120 Halle (Saale)

Germany

Peter J. Oefner

University of Regensburg

Institute of Functional Genomics

Josef-Engert-Strasse 9

93053 Regensburg

Germany

Kiyoshi Ohyama

Tokyo Institute of Technology

Graduate School of Engineering

2-12-1 Ohokayama

Meguro-ku

Tokyo 152-8551

Japan

and

RIKEN Plant Science Center

1-7-22 Suehiro-cho

Tsurumi-ku

Yokohama

Kanagawa 230-0045

Japan

Florian Rasche

Friedrich-Schiller-University Jena

Institute for Informatics

Ernst-Abbe-Platz 2

07743 Jena

Germany

Ute Roessner

The University of Melbourne

School of Botany, Building 122

Australian Centre for Plant Functional Genomics (ACPFG) and Metabolomics Australia

Professors Walk

Parkville, VIC 3052

Australia

Kazuki Saito

RIKEN Plant Science Center

Metabolomic Function Research Group

Suehiro-cho 1-7-22

Tsurumi-ku

Yokohama 230-0045

Japan

and

Graduate School of Pharmaceutical Sciences

Department of Molecular Biology and Biotechnology

Chiba University

Inohana 1-8-1

Chuo-ku

Chiba 260-8675

Japan

Nozomu Sakurai

Kazusa DNA Research Institute

2-6-7 Kazusa-Kamatari

Kisarazu

Chiba 292-0818

Japan

Satoru Sawai

Chiba University

Graduate School of Pharmaceutical Sciences

1-33 Yayoi-cho

Inage-ku

Chiba 263-8522

Japan

and

Tokiwa Phytochemical Co., Ltd.

58 Kinoko

Sakura

Chiba 285-0801

Japan

and

RIKEN Plant Science Center

1-7-22 Suehiro-cho

Tsurumi-ku

Yokohama

Kanagawa 230-0045

Japan

Nicolas Schauer

Metabolomic Discoveries GmbH

Am...

Produkt-Details

• Erscheint lt. Verlag: 28.2.2013
• Reihe/Serie: Molecular Plant Biology
• Reihe/Serie: Molecular Plant Biology
• Reihe/Serie: Molecular Plant Biology
• Sprache: englisch
• Themenwelt: Naturwissenschaften ► Biologie ► Botanik
• Themenwelt: Naturwissenschaften ► Biologie ► Genetik / Molekularbiologie
• Themenwelt: Technik
• Schlagworte: Approach • Biochemie u. Chemische Biologie • Biochemistry (Chemical Biology) • Biology • Biotechnologie • Biowissenschaften • Book • Botanik / Biochemie • Chemie • Chemistry • companies • contributors • Different • dynamic • either • Excellent • Genomforschung u. Proteomik • genomics • Genomics & Proteomics • Handbook • Institutions • introduce • IvyLeague • Life Sciences • Metabolom • Metabolomics • molecular • New • newest • Overview • Pflanzengenetik • Plant • plant biochemistry • Research • series • Successful • techniques • title • Titles
• ISBN-10: 3-527-66990-6 / 3527669906
• ISBN-13: 978-3-527-66990-5 / 9783527669905