Large-scale Genome Sequence Processing

Masahiro Kasahara, Shinichi Morishita (Autoren)

Buch | Hardcover

248 Seiten

2006
Imperial College Press (Verlag)
978-1-86094-635-6 (ISBN)

Infos

Fundamental tasks, such as the assembly of numerous whole-genome shotgun fragments, and the design of gene-specific primers or oligomers, require efficient algorithms and implementation techniques. This textbook emphasizes basic software implementation techniques for processing large-scale genome sequences and provides executable sample programs.

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Efficient computer programs have made it possible to elucidate and analyze large-scale genomic sequences. Fundamental tasks, such as the assembly of numerous whole-genome shotgun fragments, the alignment of complementary DNA sequences with a long genome, and the design of gene-specific primers or oligomers, require efficient algorithms and state-of-the-art implementation techniques. This textbook emphasizes basic software implementation techniques for processing large-scale genome sequences and provides executable sample programs.

Inhalt

Simple String Search Algorithms; Sorting; Lookup Tables; Suffix Arrays; Space-Efficient String Search; Approximate String Search Algorithms; Seeded Alignment; Highly-Specific Oligomer Design; Whole Genome Shotgun Sequencing.

Produkt-Details

• Verlagsort: London
• Sprache: englisch
• Themenwelt: Informatik ► Weitere Themen ► Bioinformatik
• Themenwelt: Naturwissenschaften ► Biologie ► Genetik / Molekularbiologie
• ISBN-10: 1-86094-635-6 / 1860946356
• ISBN-13: 978-1-86094-635-6 / 9781860946356
• Zustand: Neuware