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Concepts in Bioinformatics and Genomics

Buch | Softcover
504 Seiten
2016
Oxford University Press Inc (Verlag)
978-0-19-993699-1 (ISBN)
CHF 184,15 inkl. MwSt
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Concepts in Bioinformatics and Genomics takes a conceptual approach to its subject, balancing biology, mathematics, and programming while highlighting relevant real-world applications and providing students with the tools to compute and analyze biological data. It presents many thought-provoking exercises that will stretch students' imaginations and give them a deeper understanding of the molecular biology, basic probability, software programs, and
program-coding methodology underpinning this exciting field.

Jamil Momand is Professor of Biochemistry at California State University, Los Angeles. He received the Cal State LA Outstanding Professor Award for the 2014-2015 academic year. Alison McCurdy is Professor of Chemistry at California State University, Los Angeles. She was the recipient of the 2009 California State University Distinguished Woman Award.

Preface
About the Author


Chapter I: Review of Molecular Biology

Learning outcomes

1.1 Genes and DNA

1.2 RNA-the intermediary

1.3 Amino acids-the building blocks of proteins

1.4 Levels of protein structure

1.5 The genetic code

1.6 Relative sizes of matter

1.7 DNA alterations

1.8 A case study: sickle cell anemia
· What are the symptoms of sickle cell anemia?
· Sickle cell anemia is the first disease linked to a specific mutation

1.9 Introduction to p53

Summary
`L Exercises
References

Box 1-1. A Closer Look: A rare inherited cancer is caused by mutated Tp53


Chapter 2: Information organization and sequence databases

Learning outcomes

2.1 Introduction

2.2 Public databases

2.3 The header

2.4 The feature keys
· The CDS feature key and gene structure
· The gene feature key and FASTA format
· Thought Question 2.1

2.5 Limitations of GenBank

2.6 Reference Sequence (RefSeq)
· Alternative splicing

2.7 Primary and secondary databases
· The UniProt Knowledge Base (UniProtKB) database

Summary

Exercises
Answers to Thought Questions
References

Box 2-1. Scientist Spotlight: Walter Goad, GenBank Founder
Box 2-2. A Closer Look: GenBank is Critical to the Discovery of the MDM2 Oncoprotein-an Inhibitor of p53


Chapter 3: Molecular Evolution

Learning outcomes

3.1 Introduction

3.2 Conserved regions in proteins

3.3 Molecular Evolution
· Transformation of normal cells to cancer cells
· Are mutations inherited?
· Natural selection
· Mechanisms of mutation

3.4 Ancestral genes and protein evolution

3.5 Modular proteins and protein evolution

Summary
Exercises
References

Box 3-1. Scientist Spotlight: Barbara McClintock


Chapter 4: Substitution matrices

Learning outcomes

4.1 Introduction

4.2 The identity substitution matrix

4.3 An amino acid substitution system based on natural selection

4.4 Development of the matrix of

Erscheinungsdatum
Zusatzinfo Illustrations
Verlagsort New York
Sprache englisch
Themenwelt Mathematik / Informatik Informatik Software Entwicklung
Naturwissenschaften Biologie Genetik / Molekularbiologie
ISBN-10 0-19-993699-4 / 0199936994
ISBN-13 978-0-19-993699-1 / 9780199936991
Zustand Neuware
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